IL_9XTD_041

3D structure

PDB id

9XTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli delta lepA 30S ribosomal subunit class B, body domain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XTD_041 not in the Motif Atlas

Homologous match to IL_6CZR_169

Geometric discrepancy: 0.4109

The information below is about IL_6CZR_169

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.14

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

36

Unit IDs

9XTD|1|A|G|1416
9XTD|1|A|G|1417
9XTD|1|A|A|1418
9XTD|1|A|G|1419
*
9XTD|1|A|U|1481
9XTD|1|A|G|1482
9XTD|1|A|A|1483
9XTD|1|A|C|1484

Current chains

Chain A

RNA (1128-MER)

Nearby chains