IL_9XTD_043

3D structure

PDB id

9XTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli delta lepA 30S ribosomal subunit class B, body domain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

9XTD|1|A|A|1441

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XTD_043 not in the Motif Atlas

Geometric match to IL_2OZB_003

Geometric discrepancy: 0.3289

The information below is about IL_2OZB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14190.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

9XTD|1|A|U|1440
9XTD|1|A|A|1441
9XTD|1|A|G|1442
*
9XTD|1|A|C|1460
9XTD|1|A|G|1461

Current chains

Chain A

RNA (1128-MER)

Nearby chains

Chain T

Small ribosomal subunit protein bS20