IL_9XWO_013

3D structure

PDB id

9XWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GGACC*GGGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XWO_013 not in the Motif Atlas

Geometric match to IL_8GLP_328

Geometric discrepancy: 0.3985

The information below is about IL_8GLP_328

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20358.1

Basepair signature

cWW-L-R-L-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9XWO|1|A|G|203
9XWO|1|A|G|204
9XWO|1|A|A|205
9XWO|1|A|C|206
9XWO|1|A|C|207
*
9XWO|1|A|G|211
9XWO|1|A|G|212
9XWO|1|A|G|213
9XWO|1|A|C|214

Current chains

Chain A

16S rRNA

Nearby chains