IL_9XWO_014

3D structure

PDB id

9XWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

9XWO|1|A|U|244, 9XWO|1|A|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XWO_014 not in the Motif Atlas

Homologous match to IL_6CZR_123

Geometric discrepancy: 0.1867

The information below is about IL_6CZR_123

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.2

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

9XWO|1|A|G|242
9XWO|1|A|A|243
9XWO|1|A|U|244
9XWO|1|A|U|245
9XWO|1|A|A|246
9XWO|1|A|G|247
*
9XWO|1|A|C|277
9XWO|1|A|G|278
9XWO|1|A|A|279
9XWO|1|A|C|280
9XWO|1|A|G|281
9XWO|1|A|A|282
9XWO|1|A|U|283
9XWO|1|A|C|284

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain Q

30S ribosomal protein S17