IL_9XWO_041
3D structure
- PDB id
- 9XWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- GCA*UUCCC
- Length
- 8 nucleotides
- Bulged bases
- 9XWO|1|A|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9XWO_041 not in the Motif Atlas
- Homologous match to IL_6CZR_410
- Geometric discrepancy: 0.1881
- The information below is about IL_6CZR_410
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_47078.2
- Basepair signature
- cWW-cWS-L-cWW-L
- Number of instances in this motif group
- 6
Unit IDs
9XWO|1|A|G|933
9XWO|1|A|C|934
9XWO|1|A|A|935
*
9XWO|1|A|U|1380
9XWO|1|A|U|1381
9XWO|1|A|C|1382
9XWO|1|A|C|1383
9XWO|1|A|C|1384
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain 5
- Transfer RNA; tRNA
- Chain G
- 30S ribosomal protein S7
- Chain I
- 30S ribosomal protein S9
- Chain Z
- Transfer RNA; tRNA
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