IL_9XWO_047

3D structure

PDB id

9XWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GG*UCAUC

Length

7 nucleotides

Bulged bases

9XWO|1|A|C|1200, 9XWO|1|A|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XWO_047 not in the Motif Atlas

Homologous match to IL_6CZR_155

Geometric discrepancy: 0.1826

The information below is about IL_6CZR_155

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

9XWO|1|A|G|1057
9XWO|1|A|G|1058
*
9XWO|1|A|U|1199
9XWO|1|A|C|1200
9XWO|1|A|A|1201
9XWO|1|A|U|1202
9XWO|1|A|C|1203

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

30S ribosomal protein S3

Chain J

30S ribosomal protein S10

Chain N

30S ribosomal protein S14