IL_9XWO_050

3D structure

PDB id

9XWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GUUGC*GAACUC

Length

11 nucleotides

Bulged bases

9XWO|1|A|U|1126

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XWO_050 not in the Motif Atlas

Geometric match to IL_8B0X_050

Geometric discrepancy: 0.1028

The information below is about IL_8B0X_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38603.1

Basepair signature

cWW-cWS-L-R-L-R-R-L-cWW

Number of instances in this motif group

2

Unit IDs

9XWO|1|A|G|1124
9XWO|1|A|U|1125
9XWO|1|A|U|1126
9XWO|1|A|G|1127
9XWO|1|A|C|1128
*
9XWO|1|A|G|1144
9XWO|1|A|A|1145
9XWO|1|A|A|1146
9XWO|1|A|C|1147
9XWO|1|A|U|1148
9XWO|1|A|C|1149

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S9

Chain J

30S ribosomal protein S10