IL_9XWO_101
3D structure
- PDB id
- 9XWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- UUAAGUG*CUAAA
- Length
- 12 nucleotides
- Bulged bases
- 9XWO|1|a|A|1143
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9XWO_101 not in the Motif Atlas
- Homologous match to IL_7A0S_036
- Geometric discrepancy: 0.3046
- The information below is about IL_7A0S_036
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_57188.6
- Basepair signature
- cWW-tWW-L-tWW-cWW-cSH
- Number of instances in this motif group
- 6
Unit IDs
9XWO|1|a|U|1018
9XWO|1|a|U|1019
9XWO|1|a|A|1020
9XWO|1|a|A|1021
9XWO|1|a|G|1022
9XWO|1|a|U|1023
9XWO|1|a|G|1024
*
9XWO|1|a|C|1140
9XWO|1|a|U|1141
9XWO|1|a|A|1142
9XWO|1|a|A|1143
9XWO|1|a|A|1144
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 3
- 50S ribosomal protein L36
- Chain g
- Large ribosomal subunit protein uL6
- Chain i
- 50S ribosomal protein L13
Coloring options: