IL_9XWO_136

3D structure

PDB id

9XWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9XWO|1|a|U|1851
9XWO|1|a|U|1852
9XWO|1|a|A|1853
9XWO|1|a|A|1854
9XWO|1|a|U|1855
9XWO|1|a|U|1856
9XWO|1|a|G|1857
9XWO|1|a|A|1858
9XWO|1|a|U|1859
9XWO|1|a|G|1860
*
9XWO|1|a|U|1882
9XWO|1|a|U|1883
9XWO|1|a|G|1884
9XWO|1|a|A|1885
9XWO|1|a|U|1886
9XWO|1|a|C|1887
9XWO|1|a|G|1888
9XWO|1|a|A|1889
9XWO|1|a|A|1890
9XWO|1|a|G|1891

Current chains

Chain a

23S rRNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain 7

Large ribosomal subunit protein uL1