IL_9XWO_166
3D structure
- PDB id
- 9XWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- CUGAG*CGAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 9XWO|1|a|G|2780
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9XWO_166 not in the Motif Atlas
- Homologous match to IL_7A0S_093
- Geometric discrepancy: 0.1294
- The information below is about IL_7A0S_093
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.4
- Basepair signature
- cWW-tSH-tHW-tHS-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
9XWO|1|a|C|2636
9XWO|1|a|U|2637
9XWO|1|a|G|2638
9XWO|1|a|A|2639
9XWO|1|a|G|2640
*
9XWO|1|a|C|2774
9XWO|1|a|G|2775
9XWO|1|a|A|2776
9XWO|1|a|G|2777
9XWO|1|a|A|2778
9XWO|1|a|U|2779
9XWO|1|a|G|2780
9XWO|1|a|A|2781
9XWO|1|a|G|2782
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain d
- 50S ribosomal protein L3
- Chain i
- 50S ribosomal protein L13
Coloring options: