IL_9Y49_022

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y49_022 not in the Motif Atlas

Homologous match to IL_8GLP_025

Geometric discrepancy: 0.2756

The information below is about IL_8GLP_025

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

9Y49|1|A5|G|462
9Y49|1|A5|A|463
9Y49|1|A5|G|464
*
9Y49|1|A5|C|691
9Y49|1|A5|A|692
9Y49|1|A5|C|693

Current chains

Chain A5

LSU-alpha rRNA (1722-MER)

Nearby chains

Chain CE

60S ribosomal protein L6

Chain Cr

60S ribosomal protein L28