IL_9Y49_059

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y49_059 not in the Motif Atlas

Homologous match to IL_8GLP_289

Geometric discrepancy: 0.1421

The information below is about IL_8GLP_289

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

9Y49|1|A5|C|1520
9Y49|1|A5|C|1521
9Y49|1|A5|G|1522
*
9Y49|1|A5|C|1655
9Y49|1|A5|U|1656
9Y49|1|A5|G|1657

Current chains

Chain A5

LSU-alpha rRNA (1722-MER)

Nearby chains

Chain A6

Large subunit ribosomal RNA; LSU rRNA

Chain CC

60S ribosomal protein L4

Chain Ca

60S ribosomal protein L27a