IL_9Y49_082
3D structure
- PDB id
- 9Y49 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CCAAC*GUCG
- Length
- 9 nucleotides
- Bulged bases
- 9Y49|1|A5|C|1921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Y49_082 not in the Motif Atlas
- Geometric match to IL_4EYA_010
- Geometric discrepancy: 0.3155
- The information below is about IL_4EYA_010
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_37443.2
- Basepair signature
- cWW-cWW-L-R-cWW
- Number of instances in this motif group
- 11
Unit IDs
9Y49|1|A5|C|1920
9Y49|1|A5|C|1921
9Y49|1|A5|A|1922
9Y49|1|A5|A|1923
9Y49|1|A5|C|1924
*
9Y49|1|A5|G|2060
9Y49|1|A5|U|2061
9Y49|1|A5|C|2062
9Y49|1|A5|G|2063
Current chains
- Chain A5
- LSU-alpha rRNA (1722-MER)
Nearby chains
- Chain A6
- Large subunit ribosomal RNA; LSU rRNA
- Chain A7
- 5S ribosomal RNA; 5S rRNA
- Chain CF
- 60S ribosomal protein L7
- Chain CH
- 60S ribosomal protein L9
- Chain CM
- 60S ribosomal protein L14
- Chain CS
- 60S ribosomal protein L18a
- Chain Cf
- 60S ribosomal protein L35a
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