IL_9Y49_102

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGG*CGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y49_102 not in the Motif Atlas

Geometric match to IL_8GLP_173

Geometric discrepancy: 0.2356

The information below is about IL_8GLP_173

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

9Y49|1|A6|C|2595
9Y49|1|A6|G|2596
9Y49|1|A6|G|2597
*
9Y49|1|A6|C|2748
9Y49|1|A6|G|2749
9Y49|1|A6|G|2750

Current chains

Chain A6

LSU-beta rRNA (2069-MER)

Nearby chains

Chain CA

60S ribosomal protein L8

Chain Cg

60S ribosomal protein L34