IL_9Y49_135
3D structure
- PDB id
- 9Y49 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUGAGGC*GCUC
- Length
- 11 nucleotides
- Bulged bases
- 9Y49|1|A6|G|4087, 9Y49|1|A6|C|4162, 9Y49|1|A6|U|4163
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Y49_135 not in the Motif Atlas
- Homologous match to IL_9H3G_109
- Geometric discrepancy: 0.2567
- The information below is about IL_9H3G_109
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_52092.3
- Basepair signature
- cWW-cWS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9Y49|1|A6|G|4082
9Y49|1|A6|U|4083
9Y49|1|A6|G|4084
9Y49|1|A6|A|4085
9Y49|1|A6|G|4086
9Y49|1|A6|G|4087
9Y49|1|A6|C|4088
*
9Y49|1|A6|G|4161
9Y49|1|A6|C|4162
9Y49|1|A6|U|4163
9Y49|1|A6|C|4164
Current chains
- Chain A6
- LSU-beta rRNA (2069-MER)
Nearby chains
- Chain A8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CA
- 60S ribosomal protein L8
- Chain CG
- 60S ribosomal protein L7a
- Chain CX
- 60S ribosomal protein L23a
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