IL_9Y49_144

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

9Y49|1|A6|U|4437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y49_144 not in the Motif Atlas

Homologous match to IL_9PN5_100

Geometric discrepancy: 0.1445

The information below is about IL_9PN5_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.4

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

25

Unit IDs

9Y49|1|A6|G|4405
9Y49|1|A6|U|4406
9Y49|1|A6|G|4407
*
9Y49|1|A6|U|4435
9Y49|1|A6|U|4436
9Y49|1|A6|U|4437
9Y49|1|A6|U|4438
9Y49|1|A6|U|4439

Current chains

Chain A6

LSU-beta rRNA (2069-MER)

Nearby chains

Chain A5

Large subunit ribosomal RNA; LSU rRNA

Chain CB

60S ribosomal protein L3

Chain CI

60S ribosomal protein L10-like