IL_9Y49_167

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCCU*GUCA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y49_167 not in the Motif Atlas

Geometric match to IL_8OI5_126

Geometric discrepancy: 0.3392

The information below is about IL_8OI5_126

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

9Y49|1|A6|U|4885
9Y49|1|A6|C|4886
9Y49|1|A6|C|4887
9Y49|1|A6|U|4888
*
9Y49|1|A6|G|4931
9Y49|1|A6|U|4932
9Y49|1|A6|C|4933
9Y49|1|A6|A|4934

Current chains

Chain A6

LSU-beta rRNA (2069-MER)

Nearby chains

Chain CE

60S ribosomal protein L6