IL_9Y49_170

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUCG*CCUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y49_170 not in the Motif Atlas

Homologous match to IL_9PN5_125

Geometric discrepancy: 0.1889

The information below is about IL_9PN5_125

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

9Y49|1|A6|U|4972
9Y49|1|A6|U|4973
9Y49|1|A6|C|4974
9Y49|1|A6|G|4975
*
9Y49|1|A6|C|4983
9Y49|1|A6|C|4984
9Y49|1|A6|U|4985
9Y49|1|A6|G|4986

Current chains

Chain A6

LSU-beta rRNA (2069-MER)

Nearby chains

Chain CB

60S ribosomal protein L3

Chain CP

60S ribosomal protein L17

Chain Cd

60S ribosomal protein L31