IL_9Y49_173

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUU*GUCAGC

Length

9 nucleotides

Bulged bases

9Y49|1|A6|G|5049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y49_173 not in the Motif Atlas

Homologous match to IL_9H3G_143

Geometric discrepancy: 0.2483

The information below is about IL_9H3G_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_00086.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

5

Unit IDs

9Y49|1|A6|G|5000
9Y49|1|A6|U|5001
9Y49|1|A6|U|5002
*
9Y49|1|A6|G|5045
9Y49|1|A6|U|5046
9Y49|1|A6|C|5047
9Y49|1|A6|A|5048
9Y49|1|A6|G|5049
9Y49|1|A6|C|5050

Current chains

Chain A6

LSU-beta rRNA (2069-MER)

Nearby chains

Chain CB

60S ribosomal protein L3

Chain CW

60S ribosomal protein L24

Chain Cd

60S ribosomal protein L31