IL_9Y49_185

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y49_185 not in the Motif Atlas

Geometric match to IL_4M4O_001

Geometric discrepancy: 0.1968

The information below is about IL_4M4O_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

9Y49|1|B2|G|23
9Y49|1|B2|C|24
9Y49|1|B2|A|25
*
9Y49|1|B2|U|649
9Y49|1|B2|A|650
9Y49|1|B2|U|651

Current chains

Chain B2

18S rRNA (1786-MER)

Nearby chains

Chain AJ

40S ribosomal protein S9

Chain AX

40S ribosomal protein S23