IL_9Y49_200

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CACG*CGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y49_200 not in the Motif Atlas

Homologous match to IL_9PN5_157

Geometric discrepancy: 0.2915

The information below is about IL_9PN5_157

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15698.7

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

12

Unit IDs

9Y49|1|B2|C|317
9Y49|1|B2|A|318
9Y49|1|B2|C|319
9Y49|1|B2|G|320
*
9Y49|1|B2|C|331
9Y49|1|B2|G|332
9Y49|1|B2|G|333

Current chains

Chain B2

18S rRNA (1786-MER)

Nearby chains

Chain AG

40S ribosomal protein S6

Chain CW

60S ribosomal protein L24