IL_9Y49_212

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

9Y49|1|B2|A|628, 9Y49|1|B2|U|630, 9Y49|1|B2|U|631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y49_212 not in the Motif Atlas

Homologous match to IL_9PN5_173

Geometric discrepancy: 0.2706

The information below is about IL_9PN5_173

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_52042.3

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9Y49|1|B2|G|611
9Y49|1|B2|U|612
9Y49|1|B2|G|613
9Y49|1|B2|C|614
9Y49|1|B2|C|615
9Y49|1|B2|A|616
9Y49|1|B2|G|617
*
9Y49|1|B2|C|624
9Y49|1|B2|G|625
9Y49|1|B2|G|626
9Y49|1|B2|U|627
9Y49|1|B2|A|628
9Y49|1|B2|A|629
9Y49|1|B2|U|630
9Y49|1|B2|U|631
9Y49|1|B2|C|632

Current chains

Chain B2

18S rRNA (1786-MER)

Nearby chains

Chain AD

40S ribosomal protein S3

Chain AX

40S ribosomal protein S23

Chain Ae

40S ribosomal protein S30

Chain Ct

Elongation factor 2