IL_9Y49_217

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCG*CCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y49_217 not in the Motif Atlas

Homologous match to IL_9PN5_177

Geometric discrepancy: 0.5496

The information below is about IL_9PN5_177

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

9Y49|1|B2|G|694
9Y49|1|B2|C|695
9Y49|1|B2|G|696
*
9Y49|1|B2|C|734
9Y49|1|B2|C|735
9Y49|1|B2|C|736

Current chains

Chain B2

18S rRNA (1786-MER)

Nearby chains

Chain AH

40S ribosomal protein S7

Chain AW

40S ribosomal protein S15a