IL_9Y49_238
3D structure
- PDB id
- 9Y49 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GGAGUAUG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Y49_238 not in the Motif Atlas
- Homologous match to IL_9PN5_194
- Geometric discrepancy: 0.1471
- The information below is about IL_9PN5_194
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_84044.3
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 6
Unit IDs
9Y49|1|B2|G|1168
9Y49|1|B2|G|1169
9Y49|1|B2|A|1170
9Y49|1|B2|G|1171
9Y49|1|B2|U|1172
9Y49|1|B2|A|1173
9Y49|1|B2|U|1174
9Y49|1|B2|G|1175
*
9Y49|1|B2|U|1186
9Y49|1|B2|G|1187
9Y49|1|B2|A|1188
9Y49|1|B2|A|1189
9Y49|1|B2|A|1190
9Y49|1|B2|C|1191
Current chains
- Chain B2
- 18S rRNA (1786-MER)
Nearby chains
- Chain A6
- Large subunit ribosomal RNA; LSU rRNA
- Chain AX
- 40S ribosomal protein S23
- Chain Cn
- 60S ribosomal protein L41
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