IL_9Y4G_015

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

9Y4G|1|A5|U|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y4G_015 not in the Motif Atlas

Homologous match to IL_8GLP_016

Geometric discrepancy: 0.1073

The information below is about IL_8GLP_016

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

173

Unit IDs

9Y4G|1|A5|G|199
9Y4G|1|A5|U|200
9Y4G|1|A5|C|201
*
9Y4G|1|A5|G|214
9Y4G|1|A5|C|215

Current chains

Chain A5

LSU-alpha rRNA

Nearby chains

Chain A6

Large subunit ribosomal RNA; LSU rRNA

Chain CC

60S ribosomal protein L4

Chain CY

60S ribosomal protein L26