IL_9Y4G_016

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

9Y4G|1|A5|A|349

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y4G_016 not in the Motif Atlas

Homologous match to IL_8GLP_018

Geometric discrepancy: 0.1097

The information below is about IL_8GLP_018

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

9Y4G|1|A5|G|348
9Y4G|1|A5|A|349
9Y4G|1|A5|C|350
*
9Y4G|1|A8|G|25
9Y4G|1|A8|C|26

Current chains

Chain A5

LSU-alpha rRNA

Chain A8

5.8S rRNA (157-MER)

Nearby chains

Chain A6

Large subunit ribosomal RNA; LSU rRNA

Chain CC

60S ribosomal protein L4

Chain CY

60S ribosomal protein L26