IL_9Y4G_019

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGUC*GCUAC

Length

9 nucleotides

Bulged bases

9Y4G|1|A5|C|1301, 9Y4G|1|A5|U|1302, 9Y4G|1|A5|A|1303

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Y4G|1|A5|G|443
9Y4G|1|A5|G|444
9Y4G|1|A5|U|445
9Y4G|1|A5|C|446
*
9Y4G|1|A5|G|1300
9Y4G|1|A5|C|1301
9Y4G|1|A5|U|1302
9Y4G|1|A5|A|1303
9Y4G|1|A5|C|1304

Current chains

Chain A5

LSU-alpha rRNA

Nearby chains

Chain A6

Large subunit ribosomal RNA; LSU rRNA

Chain A8

5.8S ribosomal RNA; 5.8S rRNA

Chain Ce

60S ribosomal protein L32

Chain Cf

60S ribosomal protein L35a