IL_9Y4G_034

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUGGGAAGGCC*GCAGCAGCACUCG

Length

24 nucleotides

Bulged bases

9Y4G|1|A5|G|729, 9Y4G|1|A5|G|933, 9Y4G|1|A5|C|934, 9Y4G|1|A5|A|935, 9Y4G|1|A5|C|936, 9Y4G|1|A5|U|937, 9Y4G|1|A5|C|938

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Y4G|1|A5|C|727
9Y4G|1|A5|U|728
9Y4G|1|A5|G|729
9Y4G|1|A5|G|730
9Y4G|1|A5|G|731
9Y4G|1|A5|A|732
9Y4G|1|A5|A|733
9Y4G|1|A5|G|734
9Y4G|1|A5|G|735
9Y4G|1|A5|C|736
9Y4G|1|A5|C|737
*
9Y4G|1|A5|G|927
9Y4G|1|A5|C|928
9Y4G|1|A5|A|929
9Y4G|1|A5|G|930
9Y4G|1|A5|C|931
9Y4G|1|A5|A|932
9Y4G|1|A5|G|933
9Y4G|1|A5|C|934
9Y4G|1|A5|A|935
9Y4G|1|A5|C|936
9Y4G|1|A5|U|937
9Y4G|1|A5|C|938
9Y4G|1|A5|G|939

Current chains

Chain A5

LSU-alpha rRNA

Nearby chains

Chain CC

60S ribosomal protein L4

Chain CF

60S ribosomal protein L7

Chain CM

60S ribosomal protein L14

Chain CS

60S ribosomal protein L18a