IL_9Y4G_056

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

9Y4G|1|A5|U|1591

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y4G_056 not in the Motif Atlas

Homologous match to IL_9H3G_038

Geometric discrepancy: 0.1954

The information below is about IL_9H3G_038

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

173

Unit IDs

9Y4G|1|A5|C|1590
9Y4G|1|A5|U|1591
9Y4G|1|A5|G|1592
*
9Y4G|1|A5|C|1603
9Y4G|1|A5|G|1604

Current chains

Chain A5

LSU-alpha rRNA

Nearby chains

Chain A6

Large subunit ribosomal RNA; LSU rRNA

Chain CB

60S ribosomal protein L3

Chain Cj

60S ribosomal protein L37