IL_9Y4G_057
3D structure
- PDB id
- 9Y4G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GGG*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 9Y4G|1|A5|G|1625, 9Y4G|1|A5|A|1637, 9Y4G|1|A5|A|1638, 9Y4G|1|A5|U|1639
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Y4G_057 not in the Motif Atlas
- Homologous match to IL_8GLP_062
- Geometric discrepancy: 0.1175
- The information below is about IL_8GLP_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_89509.3
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
9Y4G|1|A5|G|1624
9Y4G|1|A5|G|1625
9Y4G|1|A5|G|1626
*
9Y4G|1|A5|U|1636
9Y4G|1|A5|A|1637
9Y4G|1|A5|A|1638
9Y4G|1|A5|U|1639
9Y4G|1|A5|C|1640
Current chains
- Chain A5
- LSU-alpha rRNA
Nearby chains
- Chain A6
- Large subunit ribosomal RNA; LSU rRNA
- Chain CA
- 60S ribosomal protein L8
- Chain CN
- 60S ribosomal protein L15
- Chain CP
- 60S ribosomal protein L17
- Chain Cj
- 60S ribosomal protein L37
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