IL_9Y4G_063
3D structure
- PDB id
- 9Y4G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GCGAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 9Y4G|1|A5|G|1741
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Y4G_063 not in the Motif Atlas
- Homologous match to IL_9AXU_039
- Geometric discrepancy: 0.2237
- The information below is about IL_9AXU_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_16301.3
- Basepair signature
- cWW-cWS-tWH-R-L-R-cWW
- Number of instances in this motif group
- 10
Unit IDs
9Y4G|1|A5|G|1739
9Y4G|1|A5|C|1740
9Y4G|1|A5|G|1741
9Y4G|1|A5|A|1742
9Y4G|1|A5|A|1743
9Y4G|1|A5|U|1744
*
9Y4G|1|A5|A|1786
9Y4G|1|A5|A|1787
9Y4G|1|A5|A|1788
9Y4G|1|A5|C|1789
Current chains
- Chain A5
- LSU-alpha rRNA
Nearby chains
- Chain A6
- Large subunit ribosomal RNA; LSU rRNA
- Chain A7
- 5S ribosomal RNA; 5S rRNA
- Chain CD
- 60S ribosomal protein L5
- Chain CI
- 60S ribosomal protein L10-like
- Chain CT
- 60S ribosomal protein L21
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