IL_9Y4G_086

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y4G_086 not in the Motif Atlas

Homologous match to IL_8GLP_300

Geometric discrepancy: 0.1334

The information below is about IL_8GLP_300

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9Y4G|1|A6|G|2358
9Y4G|1|A6|U|2359
9Y4G|1|A6|A|2360
9Y4G|1|A6|G|2361
9Y4G|1|A6|U|2362
9Y4G|1|A6|A|2363
9Y4G|1|A6|G|2364
*
9Y4G|1|A6|C|3858
9Y4G|1|A6|G|3859
9Y4G|1|A6|A|3860
9Y4G|1|A6|A|3861
9Y4G|1|A6|A|3862
9Y4G|1|A6|C|3863

Current chains

Chain A6

LSU-beta rRNA (2108-MER)

Nearby chains

Chain A5

Large subunit ribosomal RNA; LSU rRNA

Chain CC

60S ribosomal protein L4

Chain CP

60S ribosomal protein L17