IL_9Y4G_091

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAUC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y4G_091 not in the Motif Atlas

Homologous match to IL_9H3G_074

Geometric discrepancy: 0.1582

The information below is about IL_9H3G_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15190.4

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

26

Unit IDs

9Y4G|1|A6|C|2589
9Y4G|1|A6|G|2590
9Y4G|1|A6|A|2591
9Y4G|1|A6|U|2592
9Y4G|1|A6|C|2593
*
9Y4G|1|A6|G|2752
9Y4G|1|A6|G|2753
9Y4G|1|A6|G|2754
9Y4G|1|A6|A|2755
9Y4G|1|A6|G|2756

Current chains

Chain A6

LSU-beta rRNA (2108-MER)

Nearby chains

Chain CA

60S ribosomal protein L8

Chain CG

60S ribosomal protein L7a

Chain CZ

60S ribosomal protein L27

Chain Cg

60S ribosomal protein L34