IL_9Y4G_099

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AAG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y4G_099 not in the Motif Atlas

Homologous match to IL_9AXU_071

Geometric discrepancy: 0.1887

The information below is about IL_9AXU_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10432.3

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

11

Unit IDs

9Y4G|1|A6|A|2844
9Y4G|1|A6|A|2845
9Y4G|1|A6|G|2846
*
9Y4G|1|A6|C|3842
9Y4G|1|A6|C|3843
9Y4G|1|A6|U|3844

Current chains

Chain A6

LSU-beta rRNA (2108-MER)

Nearby chains

Chain CB

60S ribosomal protein L3

Chain CV

60S ribosomal protein L23

Chain CW

60S ribosomal protein L24