IL_9Y4G_102

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

9Y4G|1|A6|G|3839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y4G_102 not in the Motif Atlas

Homologous match to IL_8GLP_107

Geometric discrepancy: 0.1514

The information below is about IL_8GLP_107

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28217.3

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

11

Unit IDs

9Y4G|1|A6|A|2850
9Y4G|1|A6|G|2851
9Y4G|1|A6|U|2852
9Y4G|1|A6|C|2853
9Y4G|1|A6|G|2854
9Y4G|1|A6|G|2855
*
9Y4G|1|A6|C|3837
9Y4G|1|A6|U|3838
9Y4G|1|A6|G|3839
9Y4G|1|A6|U|3840

Current chains

Chain A6

LSU-beta rRNA (2108-MER)

Nearby chains

Chain A5

Large subunit ribosomal RNA; LSU rRNA

Chain CB

60S ribosomal protein L3

Chain CV

60S ribosomal protein L23