IL_9Y4G_108

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

9Y4G|1|A6|A|3663, 9Y4G|1|A6|U|3679, 9Y4G|1|A6|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y4G_108 not in the Motif Atlas

Homologous match to IL_8GLP_114

Geometric discrepancy: 0.205

The information below is about IL_8GLP_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14684.3

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

5

Unit IDs

9Y4G|1|A6|C|3660
9Y4G|1|A6|G|3661
9Y4G|1|A6|A|3662
9Y4G|1|A6|A|3663
9Y4G|1|A6|G|3664
9Y4G|1|A6|G|3665
*
9Y4G|1|A6|U|3677
9Y4G|1|A6|G|3678
9Y4G|1|A6|U|3679
9Y4G|1|A6|U|3680
9Y4G|1|A6|G|3681
9Y4G|1|A6|A|3682
9Y4G|1|A6|C|3683
9Y4G|1|A6|G|3684

Current chains

Chain A6

LSU-beta rRNA (2108-MER)

Nearby chains

Chain B2

Small subunit ribosomal RNA; SSU rRNA

Chain CA

60S ribosomal protein L8

Chain Cp

60S ribosomal protein L37a