IL_9Y4G_123

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGGGAGG*CCGCCGGUGAAAUACCA

Length

24 nucleotides

Bulged bases

9Y4G|1|A6|U|4049

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Y4G|1|A6|U|3968
9Y4G|1|A6|G|3969
9Y4G|1|A6|G|3970
9Y4G|1|A6|G|3971
9Y4G|1|A6|A|3972
9Y4G|1|A6|G|3973
9Y4G|1|A6|G|3974
*
9Y4G|1|A6|C|4037
9Y4G|1|A6|C|4038
9Y4G|1|A6|G|4039
9Y4G|1|A6|C|4040
9Y4G|1|A6|C|4041
9Y4G|1|A6|G|4042
9Y4G|1|A6|G|4043
9Y4G|1|A6|U|4044
9Y4G|1|A6|G|4045
9Y4G|1|A6|A|4046
9Y4G|1|A6|A|4047
9Y4G|1|A6|A|4048
9Y4G|1|A6|U|4049
9Y4G|1|A6|A|4050
9Y4G|1|A6|C|4051
9Y4G|1|A6|C|4052
9Y4G|1|A6|A|4053

Current chains

Chain A6

LSU-beta rRNA (2108-MER)

Nearby chains

Chain AZ

40S ribosomal protein S25

Chain Cc

Transfer RNA; tRNA

Chain Cz

60S ribosomal protein L10a