IL_9Y4G_147

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y4G_147 not in the Motif Atlas

Homologous match to IL_8GLP_162

Geometric discrepancy: 0.2731

The information below is about IL_8GLP_162

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.4

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

62

Unit IDs

9Y4G|1|A6|U|4638
9Y4G|1|A6|G|4639
9Y4G|1|A6|C|4640
*
9Y4G|1|A6|G|4659
9Y4G|1|A6|G|4660
9Y4G|1|A6|G|4661

Current chains

Chain A6

LSU-beta rRNA (2108-MER)

Nearby chains

Chain CW

60S ribosomal protein L24

Chain Cd

60S ribosomal protein L31