IL_9Y4G_148

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UU*AAUG

Length

6 nucleotides

Bulged bases

9Y4G|1|A6|A|4656, 9Y4G|1|A6|U|4657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y4G_148 not in the Motif Atlas

Homologous match to IL_8GLP_163

Geometric discrepancy: 0.2348

The information below is about IL_8GLP_163

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44609.4

Basepair signature

cWW-cWW

Number of instances in this motif group

22

Unit IDs

9Y4G|1|A6|U|4641
9Y4G|1|A6|U|4642
*
9Y4G|1|A6|A|4655
9Y4G|1|A6|A|4656
9Y4G|1|A6|U|4657
9Y4G|1|A6|G|4658

Current chains

Chain A6

LSU-beta rRNA (2108-MER)

Nearby chains

Chain CR

60S ribosomal protein L19

Chain Cd

60S ribosomal protein L31