IL_9Y4G_151

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAGC*GAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y4G_151 not in the Motif Atlas

Homologous match to IL_8GLP_166

Geometric discrepancy: 0.3895

The information below is about IL_8GLP_166

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

38

Unit IDs

9Y4G|1|A6|G|4743
9Y4G|1|A6|A|4744
9Y4G|1|A6|G|4745
9Y4G|1|A6|C|4746
*
9Y4G|1|A6|G|4954
9Y4G|1|A6|A|4955
9Y4G|1|A6|A|4956
9Y4G|1|A6|C|4957

Current chains

Chain A6

LSU-beta rRNA (2108-MER)

Nearby chains

Chain A8

5.8S ribosomal RNA; 5.8S rRNA

Chain Cf

60S ribosomal protein L35a