IL_9Y4G_159

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CG*UCG

Length

5 nucleotides

Bulged bases

9Y4G|1|A6|C|5054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y4G_159 not in the Motif Atlas

Geometric match to IL_1KUQ_002

Geometric discrepancy: 0.3343

The information below is about IL_1KUQ_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

9Y4G|1|A6|C|4996
9Y4G|1|A6|G|4997
*
9Y4G|1|A6|U|5053
9Y4G|1|A6|C|5054
9Y4G|1|A6|G|5055

Current chains

Chain A6

LSU-beta rRNA (2108-MER)

Nearby chains

Chain CB

60S ribosomal protein L3

Chain Cd

60S ribosomal protein L31