IL_9Y4G_164

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CA*UCG

Length

5 nucleotides

Bulged bases

9Y4G|1|A7|C|63

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y4G_164 not in the Motif Atlas

Geometric match to IL_8QYX_165

Geometric discrepancy: 0.1596

The information below is about IL_8QYX_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05642.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

9Y4G|1|A7|C|15
9Y4G|1|A7|A|16
*
9Y4G|1|A7|U|62
9Y4G|1|A7|C|63
9Y4G|1|A7|G|64

Current chains

Chain A7

5S ribosomal RNA

Nearby chains

Chain A5

Large subunit ribosomal RNA; LSU rRNA

Chain A6

Large subunit ribosomal RNA; LSU rRNA

Chain CD

60S ribosomal protein L5

Chain CI

60S ribosomal protein L10-like

Chain CJ

60S ribosomal protein L11