IL_9Y4G_215
3D structure
- PDB id
- 9Y4G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AG*CAUU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Y4G_215 not in the Motif Atlas
- Geometric match to IL_3D0U_004
- Geometric discrepancy: 0.2017
- The information below is about IL_3D0U_004
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- Major groove platform
- Motif group
- IL_74641.4
- Basepair signature
- cWW-tSH-cWW-L
- Number of instances in this motif group
- 36
Unit IDs
9Y4G|1|B2|A|922
9Y4G|1|B2|G|923
*
9Y4G|1|B2|C|1019
9Y4G|1|B2|A|1020
9Y4G|1|B2|U|1021
9Y4G|1|B2|U|1022
Current chains
- Chain B2
- 18S ribosomal RNA
Nearby chains
- Chain AH
- 40S ribosomal protein S7
- Chain AN
- 40S ribosomal protein S13
- Chain AW
- 40S ribosomal protein S15a
- Chain Ab
- 40S ribosomal protein S27
Coloring options: