IL_9Y4G_242

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y4G_242 not in the Motif Atlas

Homologous match to IL_9H3G_223

Geometric discrepancy: 0.2157

The information below is about IL_9H3G_223

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.4

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

62

Unit IDs

9Y4G|1|B2|U|1347
9Y4G|1|B2|G|1348
9Y4G|1|B2|G|1349
*
9Y4G|1|B2|C|1380
9Y4G|1|B2|G|1381
9Y4G|1|B2|A|1382

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AA

40S ribosomal protein SA

Chain AC

40S ribosomal protein S2

Chain AD

40S ribosomal protein S3

Chain AR

40S ribosomal protein S17