IL_9Y4G_259

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

9Y4G|1|B2|A|1824, 9Y4G|1|B2|A|1825

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Y4G|1|B2|C|1708
9Y4G|1|B2|G|1709
9Y4G|1|B2|C|1710
9Y4G|1|B2|U|1711
*
9Y4G|1|B2|A|1822
9Y4G|1|B2|A|1823
9Y4G|1|B2|A|1824
9Y4G|1|B2|A|1825
9Y4G|1|B2|G|1826

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain A6

Large subunit ribosomal RNA; LSU rRNA

Chain AX

40S ribosomal protein S23

Chain Bb

Transfer RNA; tRNA

Chain Cn

60S ribosomal protein L41

Chain Dd

RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U*(MG))-3')