IL_9Y79_010

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGCC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y79_010 not in the Motif Atlas

Homologous match to IL_6CZR_120

Geometric discrepancy: 0.2077

The information below is about IL_6CZR_120

Detailed Annotation

Minor groove platform related

Broad Annotation

Minor groove platform related

Motif group

IL_64231.4

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

12

Unit IDs

9Y79|1|D|C|132
9Y79|1|D|U|133
9Y79|1|D|G|134
9Y79|1|D|C|135
9Y79|1|D|C|136
*
9Y79|1|D|G|227
9Y79|1|D|A|228
9Y79|1|D|U|229
9Y79|1|D|G|230

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

Small ribosomal subunit protein bS20

Chain U

Small ribosomal subunit protein bS16