IL_9Y79_012
3D structure
- PDB id
- 9Y79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 9Y79|1|D|U|173
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Y79_012 not in the Motif Atlas
- Homologous match to IL_6CZR_121
- Geometric discrepancy: 0.488
- The information below is about IL_6CZR_121
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.5
- Basepair signature
- cWW-L-R-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
9Y79|1|D|G|147
9Y79|1|D|G|148
9Y79|1|D|A|149
9Y79|1|D|U|150
9Y79|1|D|A|151
9Y79|1|D|A|152
9Y79|1|D|C|153
*
9Y79|1|D|G|168
9Y79|1|D|C|169
9Y79|1|D|U|170
9Y79|1|D|A|171
9Y79|1|D|A|172
9Y79|1|D|U|173
9Y79|1|D|A|174
9Y79|1|D|C|175
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain E
- Small ribosomal subunit protein bS20
Coloring options: