IL_9Y79_017

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACAAU*AU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y79_017 not in the Motif Atlas

Homologous match to IL_6CZR_127

Geometric discrepancy: 0.1845

The information below is about IL_6CZR_127

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.2

Basepair signature

cWW-cSH-cWS-tWH-cWW

Number of instances in this motif group

5

Unit IDs

9Y79|1|D|A|371
9Y79|1|D|C|372
9Y79|1|D|A|373
9Y79|1|D|A|374
9Y79|1|D|U|375
*
9Y79|1|D|A|389
9Y79|1|D|U|390

Current chains

Chain D

16S rRNA

Nearby chains

Chain U

Small ribosomal subunit protein bS16