IL_9Y79_021
3D structure
- PDB id
- 9Y79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGAGG*CGUUAC
- Length
- 11 nucleotides
- Bulged bases
- 9Y79|1|D|U|485
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Y79_021 not in the Motif Atlas
- Geometric match to IL_8B0X_021
- Geometric discrepancy: 0.1049
- The information below is about IL_8B0X_021
- Detailed Annotation
- tWW-tWH-tHS
- Broad Annotation
- tWW-tWH-tHS
- Motif group
- IL_82100.1
- Basepair signature
- cWW-tWW-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
9Y79|1|D|G|446
9Y79|1|D|G|447
9Y79|1|D|A|448
9Y79|1|D|G|449
9Y79|1|D|G|450
*
9Y79|1|D|C|483
9Y79|1|D|G|484
9Y79|1|D|U|485
9Y79|1|D|U|486
9Y79|1|D|A|487
9Y79|1|D|C|488
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain J
- Small ribosomal subunit protein uS4
- Chain U
- Small ribosomal subunit protein bS16
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