IL_9Y79_040

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y79_040 not in the Motif Atlas

Geometric match to IL_8B0X_042

Geometric discrepancy: 0.1394

The information below is about IL_8B0X_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49794.1

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

2

Unit IDs

9Y79|1|D|G|993
9Y79|1|D|A|994
9Y79|1|D|C|995
9Y79|1|D|A|996
9Y79|1|D|U|997
*
9Y79|1|D|A|1044
9Y79|1|D|C|1045

Current chains

Chain D

16S rRNA

Nearby chains

Chain S

Small ribosomal subunit protein uS14